Rcsb.org / DDC



Domain overview in DDC niche. Based on relevant links and pages only.
rcsb.org rank
123
Number of domains linking to rcsb.org
5
semantic flow
0.59
Number of links to rcsb.org
167
semantic flow
0.59
Number of domains linked from rcsb.org
22
semantic flow
2.29
Number of links from rcsb.org
121
semantic flow
2.29

Popular pages pointing to rcsb.org

Pages with highest topical PageRank pointing to domain.

url / atext / target url
https://www.wwpdb.org/data/ccd
_chem_comp type
http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Items/_chem_comp.type.html
www.wwpdb.org
https://www.wwpdb.org/data/ccd
_pdbx_chem_comp_descriptor type
http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Items/_pdbx_chem_comp_descriptor.type.ht
www.wwpdb.org
https://www.wwpdb.org/data/ccd
_pdbx_chem_comp_identifier type
http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Items/_pdbx_chem_comp_identifier.type.ht
www.wwpdb.org
https://www.wwpdb.org/data/ccd
_pdbx_chem_comp_descriptor descriptor
http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Items/_pdbx_chem_comp_descriptor.descrip
www.wwpdb.org
https://www.wwpdb.org/data/ccd
_chem_comp id
http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Items/_chem_comp.id.html
www.wwpdb.org
http://www.rcsb.org/pdb/explore/explore.do?structureId=2hmi
sequence
http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=2HMI
http://www.rcsb.org/pdb/explore/explore.do?structureId=2hmi
jsmol
http://www.rcsb.org/pdb/explore/jmol.do?structureId=2HMI&bionumber=1
http://www.rcsb.org/pdb/explore/explore.do?structureId=1k83
query on prd_000201
http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=BirdQuery&name=PRD_0002
http://www.rcsb.org/pdb/explore/explore.do?structureId=2hmi
jsmol
http://www.rcsb.org/pdb/explore/jmol.do?structureId=2HMI
http://www.rcsb.org/pdb/explore/explore.do?structureId=1k83
sequence similarity
http://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1K83

Popular pages from rcsb.org

On-topic pages from domain with highest topical PageRank.

title / url
PR


info
relevance


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links


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rel links


info
external links


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external domains


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referring domains


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external backlinks


info
PDB-101: Geis Archive: Reprint Request
http://pdb101.rcsb.org/geis-archive/reprint-request/geis-0316-transfer-rna
0.280.793960000
PDB-101: Geis Archive: Reprint Request
http://pdb101.rcsb.org/geis-archive/reprint-request/geis-0543-a-dna
0.280.823960000
RCSB PDB - 2HMI: HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=2hmi
0.280.66131506400
PDB-101: Diabetes at a Molecular Level
http://pdb101.rcsb.org/teach/diabetes-at-a-molecular-level
0.280.766060000
RCSB PDB - 1K83: Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin Structure Summary
http://www.rcsb.org/pdb/explore/explore.do?structureId=1k83
0.280.76192648500
RCSB PDB - 1ZPQ: STRUCTURE OF BACTERIOPHAGE LAMBDA CII protein Structure Summary Page
http://www.rcsb.org/pdb/explore.do?structureId=1zpq
0.210.8133515300
RCSB PDB - 1SL2: Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template and
http://www.rcsb.org/pdb/explore/explore.do?structureId=1sl2
0.210.851646210600
RCSB PDB - 3GBI: The Rational Design and Structural Analysis of a Self-Assembled Three-Dimensional DNA Crystal Structure Summary
http://www.rcsb.org/pdb/explore/explore.do?structureId=3gbi
0.210.76117445300
RCSB PDB - 1RYS: REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=1rys
0.210.84175627500
RCSB PDB - 1UL1: Crystal structure of the human FEN1-PCNA complex Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=1ul1
0.210.8153557500

Popular prospect pages from rcsb.org

On-topic pages from domain with highest topical PageRank having a few outgoing links and domains.

title / url
PR


info
relevance


info
links


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rel links


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external links


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external domains


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referring domains


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external backlinks


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RCSB PDB - 2HMI: HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=2hmi
0.280.66131506400
RCSB PDB - 1K83: Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin Structure Summary
http://www.rcsb.org/pdb/explore/explore.do?structureId=1k83
0.280.76192648500
RCSB PDB - 1RYS: REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=1rys
0.210.84175627500
RCSB PDB - 1UL1: Crystal structure of the human FEN1-PCNA complex Structure Summary Page
http://www.rcsb.org/pdb/explore/explore.do?structureId=1ul1
0.210.8153557500
RCSB PDB - 3U5Z: Structure of T4 Bacteriophage clamp loader bound to the T4 clamp, primer-template DNA, and ATP analog Structure Summary
http://www.rcsb.org/pdb/explore/explore.do?structureId=3u5z
0.210.9171679500
RCSB PDB - 1SL2: Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template and
http://www.rcsb.org/pdb/explore/explore.do?structureId=1sl2
0.210.851646210600

Domains with most semantic flow to rcsb.org

Relevant domains with most links to selected domain.

domain info
count


info
semantic flow


info
http://drugbank.ca/ 1100.25drugbank.ca
http://wwpdb.org/ 80.17wwpdb.org
http://wikipedia.org/ 470.15wikipedia.org
http://genenames.org/ 10.01genenames.org
http://atlasgeneticsoncology.org/ 10atlasgeneticsoncology.org

Domains with most semantic flow from rcsb.org

Relevant domains with most links from selected domain.

domain info
count


info
semantic flow


info
http://qmul.ac.uk/ 130.58qmul.ac.uk
http://ensembl.org/ 260.41ensembl.org
http://genenames.org/ 260.41genenames.org
http://uniprot.org/ 270.41uniprot.org
http://pdb.org/ 40.12pdb.org
http://wwpdb.org/ 70.09wwpdb.org
http://nesg.org/ 10.03nesg.org
http://sbkb.org/ 20.03sbkb.org
http://uni-hamburg.de/ 10.03uni-hamburg.de
http://psidev.info/ 10.02psidev.info

Most linked pages from rcsb.org

Pages from domain with most relevant inbound links.

url
count


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on topic


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http://www.rcsb.org/pdb/results/results.do?startAt=0 10.150.860.02-1--1-1-1-100
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/contact/job_listings.htm 10.150.870.02-1no-1-1-1-100
http://www.rcsb.org/pdb/secondary.do?p=v2/secondary/visualize.jsp 10.150.860.02-1no-1-1-1-100
http://www.rcsb.org/pdb/search/advSearch.do?search=new 10.150.860.02-1--1-1-1-100
http://www.rcsb.org/pdb/chromosome.do 10.150.790.020.51yes85306400
http://www.rcsb.org/pdb/static.do?p=help/mypdb.html 10.150.710.02-1no-1-1-1-100
http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=HoldingsQuery&moleculeT 10.150.490.02-1--1-1-1-100
http://www.rcsb.org/pdb/admin/viewLoadResults.do 10.150.610.01-1--1-1-1-100
http://www.rcsb.org/pdb/mypdb/queryManager.do 10.150.550.01-1--1-1-1-100
http://www.rcsb.org/pdb/home/home.do 10.150.540.010.52yes129426311

Hubs from rcsb.org

Pages from domain with most likely on-topic outgoing links.

url
count


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PR


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relevance


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on topic


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http://www.rcsb.org/pdb/home/home.do 420.150.540.740.52yes129426311
http://www.rcsb.org/pdb/explore/jmol.do?structureId=4HHB&opt=3&bionumber=1 110.150.460.11-1no-1-1-1-100
http://pdb101.rcsb.org/browse 100.150.870.40.99yes67130000
http://www.rcsb.org/pdb/secondary.do?p=v2/secondary/visualize.jsp 100.150.860.08-1no-1-1-1-100
http://www.rcsb.org/pdb/secondary.do?p=v2/secondary/search.jsp 50.150.860.110.76yes109395300
http://www.rcsb.org/pdb/news.do?year=2017&article=5a3bf5f0e96b882cfa988f01 50.150.60.02-1no-1-1-1-100
http://www.rcsb.org/pdb/secondary.do?p=v2/secondary/analyze.jsp 30.150.850.02-1no-1-1-1-100
http://www.rcsb.org/pdb/chromosome.do 20.150.790.040.51yes85306400
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/policies_references.html 20.150.860-1no-1-1-1-100
http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/contact/pdb_members.html 10.150.850.030.94yes84315300

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